General features
| Gene ID | MYPE10090
|
| Type | CDS
|
| From | 1325729
|
| To | 1324476
|
| Strand | -
|
| General name | rpsC
|
| Definition | ribosomal protein S3
|
| nt length | 1254
|
| aa length | 417
|
| m.w. | 47611.00
|
| COG | [J] Translation, ribosomal structure and biogenesis
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mpne | MPN171 rpsC ribosomal protein S3 221796:222617 | 247 | 1.2e-81
|
| mgen | WP_009885841.1 30S ribosomal protein S3 [Mycoplasma genitalium] | 255 | 5.4e-85
|
| mpul | WP_010925382.1 30S ribosomal protein S3 [Mycoplasma pulmonis] | 179 | 5.2e-56
|
| mmob | WP_011264761.1 30S ribosomal protein S3 [Mycoplasma mobile] | 194 | 7.4e-62
|
| mmyc | NP_975715.1 30S ribosomal protein S3 [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 237 | 3.5e-78
|
| mgal | WP_011113286.1 30S ribosomal protein S3 [Mycoplasma gallisepticum] | 279 | 3.1e-94
|
| uure | WP_004026040.1 MULTISPECIES: 30S ribosomal protein S3 [Ureaplasma] | 273 | 4.4e-92
|
| phyt | WP_011160581.1 MULTISPECIES: 30S ribosomal protein S3 [Candidatus Phytoplasma asteris] | 193 | 5.6e-61
|
| bsub | NP_388003.2 ribosomal protein S3 (BS3) [Bacillus subtilis subsp. subtilis str. 168] | 216 | 1.4e-69
|
| cace | WP_010966406.1 MULTISPECIES: 30S ribosomal protein S3 [Clostridium] | 190 | 1.4e-59
|
| ecoli | NP_417773.1 30S ribosomal subunit protein S3 [Escherichia coli str. K-12 substr. MG1655] | 184 | 4.6e-57
|
*mpne, Mycoplasma pneumoniae; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| Ribosomal_S3_C | 1 | Ribosomal protein S3, C-terminal domain | 123-205 | 112.1 | 1.3e-32
|
| KH_2 | 1 | KH domain | 39-111 | 61.7 | 4.3e-17
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_011077823.1| 30S ribosomal protein S3 [Mycoplasma penetrans] | 417/417 (100%) | 2201 | 0.0e+00
|
| ref|WP_129374479.1| 30S ribosomal protein S3 [Mycoplasma penetrans] | 416/417 (99%) | 2196 | 0.0e+00
|
| ref|WP_004024698.1| 30S ribosomal protein S3 [Mycoplasma iowae] | 275/417 (65%) | 1429 | 0.0e+00
|
| ref|WP_011077826.1| 50S ribosomal protein L22 [Mycoplasma penetrans] | 156/165 (94%) | 829 | 4.6e-105
|
| ref|WP_129374480.1| 50S ribosomal protein L22 [Mycoplasma penetrans] | 155/165 (93%) | 827 | 7.9e-105
|
| ref|WP_011113286.1| 30S ribosomal protein S3 [Mycoplasma gallisepticum] | 140/260 (53%) | 714 | 6.6e-89
|
| ref|WP_014886316.1| 30S ribosomal protein S3 [Mycoplasma gallisepticum] | 140/260 (53%) | 714 | 6.9e-89
|
| ref|WP_014885806.1| 30S ribosomal protein S3 [Mycoplasma gallisepticum] | 140/260 (53%) | 711 | 1.8e-88
|
| ref|WP_031489037.1| 30S ribosomal protein S3 [Ureaplasma canigenitalium] | 144/259 (55%) | 705 | 1.5e-87
|
| ref|WP_027122181.1| 30S ribosomal protein S3 [Mycoplasma imitans] | 132/225 (58%) | 703 | 2.7e-87
|
Maintained by Jun Ishikawa