General features
| Gene ID | MPN009
|
| Type | CDS
|
| From | 11275
|
| To | 12060
|
| Strand | +
|
| General name | yabD
|
| Definition | hydrolase
|
| nt length | 786
|
| aa length | 261
|
| m.w. | 29819.42
|
| COG | [L] Replication, recombination and repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| mype | MYPE8110 TatD family DNase 1089516:1088734 | 173 | 7.9e-55
|
| mgen | WP_009885976.1 TatD family hydrolase [Mycoplasma genitalium] | 389 | 5.4e-140
|
| mpul | WP_010924818.1 TatD family hydrolase [Mycoplasma pulmonis] | 106 | 2.3e-29
|
| mmob | WP_011265083.1 TatD family hydrolase [Mycoplasma mobile] | 106 | 3.0e-29
|
| mmyc | NP_975914.1 deoxyribonuclease [Mycoplasma mycoides subsp. mycoides SC str. PG1] | 156 | 2.8e-48
|
| mgal | WP_011113981.1 TatD family hydrolase [Mycoplasma gallisepticum] | 197 | 1.7e-64
|
| uure | WP_004026216.1 TatD family hydrolase [Ureaplasma urealyticum] | 157 | 1.5e-48
|
| phyt | WP_011160954.1 MULTISPECIES: TatD family deoxyribonuclease [Candidatus Phytoplasma asteris] | 108 | 4.8e-30
|
| bsub | NP_387920.1 D-amino acyl-tRNA deacylase [Bacillus subtilis subsp. subtilis str. 168] | 129 | 2.7e-37
|
| cace | WP_010966271.1 MULTISPECIES: TatD family hydrolase [Clostridium] | 139 | 2.8e-41
|
| ecoli | NP_415618.1 putative metal-dependent hydrolase YcfH [Escherichia coli str. K-12 substr. MG1655] | 124 | 2.1e-35
|
*mype, Mycoplasma penetrans; mgen, Mycoplasma genitalium; mpul, Mycoplasma pulmonis; mmob, Mycoplasma mobile; mmyc, Mycoplasma mycoides; mgal, Mycoplasma gallisepticum; uure, Ureaplasma urealyticum; phyt, ; bsub, Bacillus subtilis; cace, Clostridium acetobutylicum; ecoli, Escherichia coli K-12;
Pfam search result:
| Model | No. | Descrip
tion | Position (aa) | Score | E-value
|
| TatD_DNase | 1 | TatD related DNase | 4-260 | 203.8 | 2.8e-60
|
BLAST search result (top 10 hits)
| ID Description | Identity | Score | E-value
|
| ref|WP_010874366.1| TatD family hydrolase [Mycoplasma pneumoniae] | 261/261 (100%) | 1395 | 0.0e+00
|
| ref|WP_014325282.1| TatD family hydrolase [Mycoplasma pneumoniae] | 260/261 (99%) | 1391 | 0.0e+00
|
| ref|WP_161609551.1| YchF/TatD family DNA exonuclease [Mycoplasma pneumoniae] | 260/261 (99%) | 1389 | 0.0e+00
|
| ref|WP_054173275.1| TatD family hydrolase [Mycoplasma pneumoniae] | 261/261 (100%) | 1383 | 0.0e+00
|
| ref|WP_009885976.1| TatD family hydrolase [Mycoplasma genitalium] | 176/261 (67%) | 998 | 1.8e-134
|
| ref|WP_027123731.1| TatD family hydrolase [Mycoplasma pirum] | 108/260 (41%) | 561 | 4.0e-68
|
| ref|WP_033160031.1| TatD family hydrolase [Mycoplasma alvi] | 109/260 (41%) | 553 | 8.1e-67
|
| ref|WP_027119755.1| TatD family hydrolase [Mycoplasma testudinis] | 110/260 (42%) | 525 | 1.2e-62
|
| ref|WP_011113981.1| TatD family hydrolase [Mycoplasma gallisepticum] | 106/257 (41%) | 502 | 3.6e-59
|
| ref|WP_151059880.1| YchF/TatD family DNA exonuclease [Mycoplasma gallisepticum] | 106/257 (41%) | 501 | 5.2e-59
|
Maintained by Jun Ishikawa